Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs6682467 | chr1:37898913 | C/G | 5.17E-6 | 478 | 16.02 | 14.93 | 7 | KM Plot |
| THCA | rs6682662 | chr1:224393919 | T/G | 7.27E-5 | 483 | 12.52 | 14.38 | 16.67 | KM Plot |
| THCA | rs6688309 | chr1:41558840 | G/A | 4.51E-12 | 487 | 17.7 | 17.77 | 14.92 | KM Plot |
| THCA | rs6688424 | chr1:45985716 | G/A | 6.26E-5 | 486 | 10.6 | 16.07 | 16.87 | KM Plot |
| THCA | rs6688516 | chr1:45985760 | G/A | 7.14E-5 | 480 | 10.97 | 16.07 | 16.87 | KM Plot |
| THCA | rs66885877 | chr16:20765744 | T/C | 3.4E-5 | 489 | 16.38 | 14.63 | 17.65 | KM Plot |
| THCA | rs6690041 | chr1:48612577 | G/T | 7.35E-5 | 466 | 16.97 | 14.47 | 9.77 | KM Plot |
| THCA | rs6691514 | chr1:224408168 | A/G | 0.00024 | 488 | 11.07 | 14.12 | 17 | KM Plot |
| THCA | rs66963128 | chr6:153337856 | G/T | 6.69E-5 | 480 | 15.3 | 17.7 | 11.13 | KM Plot |
| THCA | rs6696524 | chr1:41539494 | A/G | 3.57E-12 | 490 | 17.7 | 17.73 | 14.93 | KM Plot |
| THCA | rs6697233 | chr1:119112652 | C/T | 3.64E-5 | 490 | 16.23 | 15.33 | 14.57 | KM Plot |
| THCA | rs669799 | chr15:65717906 | C/T | 7.2E-5 | 476 | 16.33 | 15.08 | 15.9 | KM Plot |
| THCA | rs6698511 | chr1:41545150 | A/G | 3.61E-12 | 489 | 17.7 | 17.75 | 14.93 | KM Plot |
| THCA | rs6699087 | chr1:178433200 | G/T | 3.7E-9 | 474 | 15.83 | 16.33 | 8.83 | KM Plot |
| THCA | rs67041130 | chr7:75875295 | T/C | 0.000115 | 486 | 16.22 | 16.62 | 11.77 | KM Plot |